array3dfloodfill.h

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#pragma once
 
/*+
________________________________________________________________________
 
 (C) dGB Beheer B.V.; (LICENSE) http://opendtect.org/OpendTect_license.txt
 Author:        K.Tingdahl/Y.C.Liu
 Date:          Nov 2008
 RCS:           $Id$
 ________________________________________________________________________
 
-*/
 
#include "arraynd.h"
#include "arrayndinfo.h"
#include "arrayndimpl.h"
#include "multidimstorage.h"
#include "paralleltask.h"
#include "thread.h"
#include "varlenarray.h"
 
 
#define mMaxNrComp      10
 
 
template <class T>
mClass(Algo) Array3DFloodfill : public ParallelTask
{
public:
                        Array3DFloodfill(const Array3D<T>& input,T threshold,
                                         bool aboveisovalue,Array3D<T>& output);
                        ~Array3DFloodfill();
 
    void                setOutsideValue(T val);
    void                setInsideValue( T val )         { insideval_ = val; }
    void                useInputValue( bool yn )        { useinputval_ = yn; }
    void                use6Neighbors( bool yn )        { use6neighbors_ = yn; }
                        /*<The true, we use 6 neighbors, otherwise, use 26. */
 
    void                addSeed(int,int,int);
    bool                isAboveIsovalue() const { return aboveisovalue_; }
                        /*<Only when use input value. */
 
    int                 maxNrThreads() const    { return compartments_.size(); }
    od_int64            nrIterations() const{return input_.info().getTotalSz();}
 
protected:
 
    void                        setOutput(int,int,int,bool addseed);
    bool                        doWork(od_int64 start,od_int64 stop,int);
    int                         getNextWorkCompartment();
    void                        returnCompartment(int);
 
    int                         getWorkCompartment(int,int,int) const;
 
    T                           threshold_;
    bool                        aboveisovalue_;
    int                         use6neighbors_;
    bool                        useinputval_;
    T                           insideval_;
    T                           outsideval_;
 
    int                         nrcomp0_;
    int                         compsz0_;
    int                         nrcomp1_;
    int                         compsz1_;
    int                         nrcomp2_;
    int                         compsz2_;
 
    int                         sz0_;
    int                         sz1_;
    int                         sz2_;
 
    struct Compartment
    {
                                Compartment() : isused_( false )
                                              , seeds_( 3, 0 ) {}
        bool                    isused_;
        Threads::ReadWriteLock  lock_;
        MultiDimStorage<int>    seeds_; 
    };
 
    ObjectSet<Compartment>      compartments_;
    Threads::ConditionVar       compartmentlock_;
    TypeSet<int>                permutation_;
 
    const Array3D<T>&           input_;
    Array3D<T>&                 output_;
    Array3DImpl<bool>*          isdefined_;
};
 
 
template <class T> inline
Array3DFloodfill<T>::Array3DFloodfill( const Array3D<T>& input, T threshold,
                                       bool max, Array3D<T>& output )
    : input_(input)
    , output_(output)
    , threshold_(threshold)
    , aboveisovalue_(max)
    , insideval_(mUdf(T))
    , use6neighbors_(true)
    , useinputval_(true)
    , sz0_(input.info().getSize(0))
    , sz1_(input.info().getSize(1))
    , sz2_(input.info().getSize(2))
    , isdefined_(0)
    , nrcomp0_(0)
    , nrcomp1_(0)
    , nrcomp2_(0)
    , compsz0_(0)
    , compsz1_(0)
    , compsz2_(0)
{
    isdefined_ = new Array3DImpl<bool>( sz0_, sz1_, sz2_ );
    OD::memZero( isdefined_->getData(), sizeof(bool)*sz0_*sz1_*sz2_ );
 
    setOutsideValue( mUdf(T) );
 
    compsz0_ = sz0_/mMaxNrComp; if ( compsz0_<3 ) compsz0_ = 3;
    compsz1_ = sz1_/mMaxNrComp; if ( compsz1_<3 ) compsz1_ = 3;
    compsz2_ = sz2_/mMaxNrComp; if ( compsz2_<3 ) compsz2_ = 3;
 
    nrcomp0_ = sz0_ % compsz0_ ? sz0_/compsz0_+1 : sz0_/compsz0_;
    nrcomp1_ = sz1_ % compsz1_ ? sz1_/compsz1_+1 : sz1_/compsz1_;
    nrcomp2_ = sz2_ % compsz2_ ? sz2_/compsz2_+1 : sz2_/compsz2_;
 
    const int nrcompartments = nrcomp0_*nrcomp1_*nrcomp2_;
    mAllocVarLenArr( int, arr, nrcompartments);
    for ( int idx=0; idx<nrcompartments; idx++ )
    {
        compartments_ += new Compartment();
        arr[idx] = idx;
    }
 
    std::random_shuffle( mVarLenArr(arr), arr+nrcompartments );
    for ( int idx=0; idx<nrcompartments; idx++ )
        permutation_ += arr[idx];
}
 
 
template <class T> inline
Array3DFloodfill<T>::~Array3DFloodfill()
{
    delete isdefined_;
    deepErase( compartments_ );
}
 
 
template <class T> inline
int Array3DFloodfill<T>::getWorkCompartment( int x0, int x1, int x2 ) const
{
    return (x0/compsz0_)*(x1/compsz1_)*(x2/compsz2_);
}
 
 
template <class T> inline
void Array3DFloodfill<T>::setOutsideValue( T val )
{
    outsideval_ = val;
    output_.setAll( outsideval_ );
}
 
 
template <class T> inline
void Array3DFloodfill<T>::addSeed( int x0, int x1, int x2 )
{
    setOutput( x0, x1, x2, true );
}
 
 
template <class T> inline
void Array3DFloodfill<T>::setOutput( int x0, int x1, int x2, bool addseed )
{
    if ( x0<0 || x0>=sz0_ || x1<0 || x1>=sz1_ || x2<0 || x2>=sz2_ )
        return;
 
    addToNrDone( 1 );
 
    const int cellidx = getWorkCompartment( x0, x1, x2 );
 
    compartments_[cellidx]->lock_.readLock();
    if ( isdefined_->get(x0,x1,x2) )
    {
        compartments_[cellidx]->lock_.readUnLock();
        return;
    }
 
    if ( !compartments_[cellidx]->lock_.convReadToWriteLock() )
    {
        if ( isdefined_->get(x0,x1,x2) )
        {
            compartments_[cellidx]->lock_.writeUnLock();
            return;
        }
    }
 
    if ( addseed )
        isdefined_->set( x0, x1, x2, true );
 
    const T inputval = input_.get( x0, x1, x2 );
 
    T val = inputval;
    if ( !useinputval_ && ((aboveisovalue_ && inputval<threshold_) ||
                           (!aboveisovalue_ && inputval>threshold_)) )
        val = outsideval_;
 
    output_.set( x0, x1, x2, val );
 
    if ( addseed && ((aboveisovalue_ && inputval>=threshold_) ||
                     (!aboveisovalue_ && inputval<=threshold_) ) )
    {
        int dummy;
        int seed[] = { x0, x1, x2 };
        compartments_[cellidx]->seeds_.add( &dummy, seed );
        compartmentlock_.signal( false );
    }
 
    compartments_[cellidx]->lock_.writeUnLock();
}
 
 
template <class T> inline
int Array3DFloodfill<T>::getNextWorkCompartment()
{
    compartmentlock_.lock();
    while ( true )
    {
        bool nothingleft = true;
        for ( int idx=permutation_.size()-1; idx>=0; idx-- )
        {
            const int compidx = permutation_[idx];
            if ( compartments_[compidx]->isused_ )
                nothingleft = false;
            else
            {
                compartments_[compidx]->lock_.readLock();
                if ( !compartments_[compidx]->seeds_.isEmpty() )
                {
                    compartments_[compidx]->lock_.readUnLock();
                    compartments_[compidx]->isused_ = true;
                    compartmentlock_.unLock();
                    return compidx;
                }
 
                compartments_[compidx]->lock_.readUnLock();
            }
        }
 
        if ( nothingleft )
            break;
 
        compartmentlock_.wait();
    }
 
    compartmentlock_.unLock();
    return -1;
}
 
 
template <class T> inline
void Array3DFloodfill<T>::returnCompartment( int comp )
{
    compartmentlock_.lock();
    compartments_[comp]->isused_ = false;
    compartmentlock_.unLock();
    compartmentlock_.signal( true );
}
 
 
template <class T> inline
bool Array3DFloodfill<T>::doWork( od_int64 start, od_int64 stop, int )
{
    while ( shouldContinue() )
    {
        const int compidx = getNextWorkCompartment();
        if ( compidx==-1 )
            return true;
 
        Compartment& comp = *compartments_[compidx];
        comp.lock_.readLock();
        while ( !comp.seeds_.isEmpty() )
        {
            int idxs[3];
            int arrpos[3];
            comp.lock_.convReadToWriteLock();
 
            if ( !comp.seeds_.getIndex( 0, idxs ) ||
                 !comp.seeds_.getPos( idxs, arrpos ) )
            {
                comp.lock_.writeUnLock();
                returnCompartment( compidx );
                pErrMsg("Error!");
                return false;
            }
 
            comp.seeds_.remove( idxs );
            comp.lock_.writeUnLock();
 
            for ( int i=-1; i<=1; i++ )
            {
                for ( int j=-1; j<=1; j++ )
                {
                    for ( int k=-1; k<=1; k++ )
                    {
                        const char nrzeros = !i + !j + !k;
                        if ( nrzeros==3 )
                            continue;
 
                        const bool addseed = !use6neighbors_ || nrzeros==2;
                        setOutput( arrpos[0]+i, arrpos[1]+j, arrpos[2]+k,
                                   addseed );
                    }
                }
            }
 
            comp.lock_.readLock();
        }
 
        comp.lock_.readUnLock();
        returnCompartment( compidx );
    }
 
    return true;
}